Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Protein ning | E5284_RS10320 | Not Available | Positive | 2183485 - 2184096 | 23125.6 |
| Hypothetical protein | E5284_RS10325 | Not Available | Positive | 2184093 - 2184230 | 5447.66 |
| Bacteriophage antiterminator protein q | E5284_RS10330 | Not Available | Positive | 2184227 - 2184916 | 26397.5 |
| Hypothetical protein | E5284_RS10335 | Not Available | Negative | 2185098 - 2185595 | 19251.2 |
| Antiholin/holin protein | E5284_RS10340 | Not Available | Positive | 2186004 - 2186402 | 13607.0 |
| Holin/antiholin | E5284_RS10345 | Not Available | Positive | 2186399 - 2186674 | 10320.9 |
| Endolysin | E5284_RS10350 | Not Available | Positive | 2186674 - 2187216 | 20130.8 |
| Hypothetical protein | E5284_RS10355 | Not Available | Positive | 2187213 - 2187485 | 9669.57 |
| Hypothetical protein | E5284_RS23295 | Not Available | Positive | 2187442 - 2187645 | 7510.97 |
| Terminase small subunit | E5284_RS10365 | Not Available | Positive | 2188022 - 2189011 | 36881.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

