Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-fucose mutarotase | E5284_RS04475 | Not Available | Negative | 916929 - 917351 | 15222.5 |
| l-fuculokinase | E5284_RS04480 | Not Available | Negative | 917353 - 918771 | 51615.5 |
| l-fucose isomerase | E5284_RS04485 | Not Available | Negative | 918869 - 920644 | 65135.6 |
| sugar abc transporter atp-binding protein | E5284_RS04490 | Not Available | Positive | 921109 - 922608 | 55259.0 |
| abc transporter permease | E5284_RS04495 | Not Available | Positive | 922612 - 923595 | 34547.0 |
| abc transporter substrate-binding protein | E5284_RS04500 | Not Available | Positive | 923669 - 924619 | 33497.2 |
| fggy-family carbohydrate kinase | E5284_RS04505 | Not Available | Positive | 924673 - 926253 | 56841.6 |
| laci family dna-binding transcriptional regulator | E5284_RS04510 | Not Available | Positive | 926318 - 927316 | 37426.0 |
| l-fuculose-phosphate aldolase | E5284_RS04515 | Not Available | Positive | 927456 - 928103 | 23922.8 |
| lactaldehyde reductase | E5284_RS04520 | Not Available | Positive | 928131 - 929279 | 40515.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

