Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-met | Not Available | Not Available | Positive | 908870 - 908946 | Not Available |
| murein transglycosylase a | E5284_RS04430 | Not Available | Positive | 909151 - 910248 | 40168.5 |
| trna cyclic n6-threonylcarbamoyladenosine(37) synthase tcda | E5284_RS04435 | Not Available | Positive | 910379 - 911185 | 28500.5 |
| cysteine desulfurase sulfur acceptor subunit csde | E5284_RS04440 | Not Available | Negative | 911254 - 911697 | 16089.3 |
| cysteine desulfurase csda | E5284_RS04445 | Not Available | Negative | 911697 - 912902 | 43069.6 |
| ygdi/ygdr family lipoprotein | E5284_RS04450 | Not Available | Positive | 913095 - 913322 | 8189.72 |
| glycine cleavage system transcriptional regulator gcva | E5284_RS04455 | Not Available | Positive | 913685 - 914602 | 34382.4 |
| duf423 domain-containing protein | E5284_RS04460 | Not Available | Positive | 914621 - 915016 | 14472.2 |
| 23s rrna (cytidine(2498)-2'-o)-methyltransferase rlmm | E5284_RS04465 | Not Available | Positive | 915009 - 916109 | 41965.6 |
| l-fucose operon activator | E5284_RS04470 | Not Available | Negative | 916137 - 916871 | 27332.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

