Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate abc transporter permease | E5284_RS04270 | Not Available | Negative | 871636 - 872538 | 34272.6 |
| carbohydrate abc transporter permease | E5284_RS04275 | Not Available | Negative | 872531 - 873421 | 33210.9 |
| cupin domain-containing protein | E5284_RS04280 | Not Available | Negative | 873902 - 874228 | 12215.8 |
| aspartate/glutamate racemase | E5284_RS04285 | Not Available | Positive | 874371 - 875063 | 24982.9 |
| lysr family transcriptional regulator | E5284_RS04290 | Not Available | Negative | 875050 - 875985 | 34864.2 |
| diaminopimelate decarboxylase | E5284_RS04295 | Not Available | Positive | 876102 - 877358 | 45621.7 |
| laci family dna-binding transcriptional regulator | E5284_RS04300 | Not Available | Negative | 877499 - 878509 | 37159.5 |
| hth-type transcriptional regulator galr | E5284_RS04305 | Not Available | Negative | 878523 - 879551 | 36988.1 |
| bifunctional acyl-acp--phospholipid o-acyltransferase/long-chain-fatty-acid--acp ligase | E5284_RS04315 | Not Available | Positive | 880154 - 882313 | 80422.5 |
| lysophospholipid transporter lplt | E5284_RS04320 | Not Available | Positive | 882306 - 883499 | 41471.7 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

