Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| multidrug/biocide efflux pace transporter | E5284_RS04220 | Not Available | Negative | 860037 - 860492 | 17485.8 |
| lysr family transcriptional regulator | E5284_RS04225 | Not Available | Positive | 860594 - 861478 | 32611.2 |
| acetyl-coa c-acetyltransferase | E5284_RS04230 | Not Available | Positive | 861582 - 862760 | 41375.6 |
| oligogalacturonate-specific porin kdgm family protein | E5284_RS04235 | Not Available | Positive | 863235 - 863918 | 25800.7 |
| oligogalacturonate lyase family protein | E5284_RS04240 | Not Available | Negative | 864086 - 865261 | 44050.5 |
| 5-dehydro-4-deoxy-d-glucuronate isomerase | E5284_RS04245 | Not Available | Positive | 865721 - 866557 | 31027.1 |
| 2-dehydro-3-deoxy-d-gluconate 5-dehydrogenase kdud | E5284_RS04250 | Not Available | Positive | 866615 - 867376 | 27138.6 |
| sugar porter family mfs transporter | E5284_RS04255 | Not Available | Positive | 867691 - 869109 | 51632.5 |
| abc transporter substrate-binding protein | E5284_RS04260 | Not Available | Negative | 869196 - 870482 | 48200.6 |
| abc transporter atp-binding protein | E5284_RS04265 | Not Available | Negative | 870496 - 871623 | 41984.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

