Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | E5284_RS04120 | Not Available | Positive | 830658 - 831176 | 19755.9 |
| autotransporter outer membrane beta-barrel domain-containing protein | E5284_RS04125 | Not Available | Negative | 831382 - 835737 | 152048.0 |
| inverse autotransporter beta domain-containing protein | E5284_RS04130 | Not Available | Negative | 836159 - 839701 | 126246.0 |
| poly-beta-1,6 n-acetyl-d-glucosamine export porin pgaa | E5284_RS04135 | Not Available | Positive | 840495 - 842957 | 92023.5 |
| poly-beta-1,6-n-acetyl-d-glucosamine n-deacetylase pgab | E5284_RS04140 | Not Available | Positive | 842967 - 844988 | 76646.6 |
| poly-beta-1,6-n-acetyl-d-glucosamine synthase | E5284_RS04145 | Not Available | Positive | 844985 - 846319 | 50902.8 |
| poly-beta-1,6-n-acetyl-d-glucosamine biosynthesis protein pgad | E5284_RS04150 | Not Available | Positive | 846316 - 846816 | 19241.7 |
| 4fe-4s mono-cluster protein yjdi | E5284_RS04155 | Not Available | Positive | 846922 - 847152 | 8640.45 |
| gnat family n-acetyltransferase | E5284_RS04160 | Not Available | Positive | 847164 - 847436 | 10117.2 |
| lysr substrate-binding domain-containing protein | E5284_RS04165 | Not Available | Negative | 847482 - 848411 | 34850.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

