Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein ygfx | E5284_RS04070 | Not Available | Positive | 821646 - 822053 | 15968.9 |
| flavodoxin fldb | E5284_RS04075 | Not Available | Negative | 822099 - 822620 | 19688.2 |
| site-specific tyrosine recombinase xerd | E5284_RS04080 | Not Available | Positive | 822733 - 823629 | 34286.4 |
| bifunctional protein-disulfide isomerase/oxidoreductase dsbc | E5284_RS04085 | Not Available | Positive | 823653 - 824366 | 25843.3 |
| single-stranded-dna-specific exonuclease recj | E5284_RS04090 | Not Available | Positive | 824372 - 826105 | 63088.1 |
| peptide chain release factor 2 | E5284_RS04095 | Not Available | Positive | 826196 - 827294 | 41239.1 |
| lysine--trna ligase | E5284_RS04100 | Not Available | Positive | 827304 - 828821 | 57674.7 |
| isopentenyl-diphosphate delta-isomerase | E5284_RS04105 | Not Available | Negative | 828915 - 829463 | 20699.3 |
| amidase activator acts | E5284_RS04110 | Not Available | Positive | 829624 - 830382 | 26620.0 |
| Trna-gly | Not Available | Not Available | Positive | 830462 - 830535 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

