Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Bacteriophage dna replication protein | E5284_RS10280 | Not Available | Positive | 2178661 - 2179410 | 27397.1 |
| hypothetical protein | E5284_RS10285 | Not Available | Positive | 2179429 - 2179740 | 11471.2 |
| hypothetical protein | E5284_RS10290 | Not Available | Positive | 2179737 - 2180120 | 14113.0 |
| hypothetical protein | E5284_RS23165 | Not Available | Positive | 2180117 - 2180281 | 6251.38 |
| Ead protein | E5284_RS23290 | Not Available | Positive | 2180278 - 2180826 | 19607.8 |
| Trna methyltransferase | E5284_RS23225 | Not Available | Positive | 2180828 - 2181007 | 6520.87 |
| Hypothetical protein | E5284_RS10300 | Not Available | Positive | 2180998 - 2181657 | 24688.1 |
| Hypothetical protein | E5284_RS10305 | Not Available | Positive | 2181654 - 2182526 | 32141.9 |
| Hypothetical protein | E5284_RS10310 | Not Available | Positive | 2182680 - 2183276 | 22167.5 |
| Hypothetical protein | E5284_RS10315 | Not Available | Positive | 2183276 - 2183482 | 8047.36 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

