Citrobacter freundii strain Upstream_1

Gram-negativeRodFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter freundii strain Upstream_1 is a Gram-negative, rod-shaped bacterium characterized by its facultative anaerobic metabolism and nonsporulating nature. This strain has been isolated from diverse environments, including hospital sewage, the intestinal tract, sewage systems, soil, and surface waters, indicating its versatility and adaptability to various ecological niches. As a facultative anaerobe, Citrobacter freundii strain Upstream_1 is capable of surviving in both aerobic and anaerobic conditions, allowing it to thrive in environments where oxygen availability fluctuates. The bacterium's presence in hospital sewage suggests a potential association with human activity, although the specific interactions in such environments require careful study to draw any conclusions regarding its role. The ability of C. freundii to inhabit both natural and anthropogenic environments, such as soil and surface waters, points to its ecological significance in nutrient cycling and microbial community dynamics. Its presence in these diverse habitats may influence local microbial populations and contribute to the degradation of organic matter, further emphasizing the importance of understanding its ecological role in both natural ecosystems and human-impacted environments. This adaptability underscores the need for ongoing research into its biological interactions and environmental impact.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter freundii
Strainstrain Upstream_1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Citrobacter freundii strain Upstream_1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathospital sewage; intestinal tract; sewage; soil; surface waters
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter freundii strain Upstream_1


Gene Summary

Adenine Count

1142509 bp

Thymine Count

1145473 bp

Guanine Count

1275806 bp

Cytosine Count

1275705 bp

Genome Length

4839493 bp

Protein-coding Genes

4266 genes

Non-Coding Genes

304 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+617935 - 617949Not Available
Putative integraseE5284_RS03150Not Available+631713 - 63313753710.7
hypothetical proteinE5284_RS03155Not Available+633134 - 63374823008.8
helix-turn-helix domain-containing proteinE5284_RS03160Not Available+633897 - 6341037781.32
host cell division inhibitor icd-like proteinE5284_RS03170Not Available+634537 - 6347799070.77
Hypothetical proteinE5284_RS03175Not Available+634772 - 6349727363.97
Hypothetical proteinE5284_RS03180Not Available+634977 - 63527611400.8
P101E5284_RS03185Not Available+635273 - 63669152446.7
Hypothetical proteinE5284_RS03190Not Available+637130 - 63762117972.2
hypothetical proteinE5284_RS03195Not Available+638188 - 63844810047.9

Displaying genes 1 – 10 of 4570 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites