Agrobacterium tumefaciens strain 1D1460

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens strain 1D1460 is a Gram-negative, rod-shaped bacterium classified as an aerobe, indicating that it requires oxygen for growth. This strain is characterized by its mobility, facilitated by the presence of flagella. It thrives optimally at a temperature of 25°C and falls within the mesophilic temperature range, making it well-suited for temperate environments. This strain possesses three replicons and has a unique cellular structure with two membranes. A. tumefaciens strain 1D1460 exists as a free-living organism and has a diverse range of hosts, primarily within the Viridiplantae group. Notable host plants include Triticum aestivum (wheat), Solanum tuberosum (potato), Solanum lycopersicum (tomato), Oryza sativa (rice), Arabidopsis, and several others, including various legumes and ornamental species. One of the significant health effects associated with A. tumefaciens strain 1D1460 is its role in causing crown gall disease, which manifests as tumors on the plants it infects. This disease results in the formation of crown gall tumors and associated symptoms, leading to significant agricultural implications. The ecological insight from the presence of A. tumefaciens in multiple habitats and its interactions with a wide range of plant hosts underscores its importance in plant pathology. Understanding its mechanisms of pathogenesis can provide valuable information for managing crop diseases and improving agricultural resilience.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
Strainstrain 1D1460

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens strain 1D1460
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae, Triticum aestivum, Solanum tuberosum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens strain 1D1460 plasmid pTi1D1460,

Gene Summary

Adenine Count

46575 bp

Thymine Count

46246 bp

Guanine Count

61583 bp

Cytosine Count

59829 bp

Genome Length

214233 bp

Protein-coding Genes

192 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
siderophore abc transporter substrate-binding proteinAt1D1460_RS11095Not AvailablePositive2125164 - 212610233609.3
abc transporter permeaseAt1D1460_RS11100Not AvailablePositive2126252 - 212721734280.6
iron chelate uptake abc transporter family permease subunitAt1D1460_RS11105Not AvailablePositive2127210 - 212817834885.4
abc transporter atp-binding proteinAt1D1460_RS11110Not AvailablePositive2128175 - 212893328031.1
dna starvation/stationary phase protection protein dpsAt1D1460_RS11115Not AvailablePositive2129056 - 212954417840.1
hypothetical proteinAt1D1460_RS28550Not AvailablePositive2129582 - 21298519599.75
Trna-glyNot AvailableNot AvailablePositive2130205 - 2130279Not Available
methyl-accepting chemotaxis proteinAt1D1460_RS11130Not AvailablePositive2130592 - 213255369185.7
aldo/keto reductaseAt1D1460_RS11135Not AvailableNegative2132773 - 213360629798.7
mfs transporterAt1D1460_RS11140Not AvailableNegative2133669 - 213485040576.0

Displaying genes 4231 – 4240 of 4917 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
TumorsCausesPMC177831
Crown gall diseaseCausesPMC2241609
Crown gall diseaseCausesPMC2653234
Crown gall diseaseCausesPMC11575935
Crown and cane gall symptomsCausesPMC12602688
Crown and cane gallsCausesPMC12602688
Crown gall diseaseCausesPMC9343901
Crown gallCausesPMC12030312
Crown-gall diseaseCausesPMC7248198
Crown gall tumorsCausesPMC8087989

Displaying health effects 1 – 10 of 11 in total