Agrobacterium tumefaciens strain 1D1460

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens strain 1D1460 is a Gram-negative, rod-shaped bacterium classified as an aerobe, indicating that it requires oxygen for growth. This strain is characterized by its mobility, facilitated by the presence of flagella. It thrives optimally at a temperature of 25°C and falls within the mesophilic temperature range, making it well-suited for temperate environments. This strain possesses three replicons and has a unique cellular structure with two membranes. A. tumefaciens strain 1D1460 exists as a free-living organism and has a diverse range of hosts, primarily within the Viridiplantae group. Notable host plants include Triticum aestivum (wheat), Solanum tuberosum (potato), Solanum lycopersicum (tomato), Oryza sativa (rice), Arabidopsis, and several others, including various legumes and ornamental species. One of the significant health effects associated with A. tumefaciens strain 1D1460 is its role in causing crown gall disease, which manifests as tumors on the plants it infects. This disease results in the formation of crown gall tumors and associated symptoms, leading to significant agricultural implications. The ecological insight from the presence of A. tumefaciens in multiple habitats and its interactions with a wide range of plant hosts underscores its importance in plant pathology. Understanding its mechanisms of pathogenesis can provide valuable information for managing crop diseases and improving agricultural resilience.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
Strainstrain 1D1460

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens strain 1D1460
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae, Triticum aestivum, Solanum tuberosum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens strain 1D1460


Gene Summary

Adenine Count

420112 bp

Thymine Count

420227 bp

Guanine Count

620310 bp

Cytosine Count

621221 bp

Genome Length

2081870 bp

Protein-coding Genes

1875 genes

Non-Coding Genes

21 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
plasmid partitioning protein repbAt1D1460_RS27120Not AvailablePositive1088 - 209836494.6
plasmid replication protein repcAt1D1460_RS27125Not AvailablePositive2313 - 363248721.4
recombinase family proteinAt1D1460_RS27130Not AvailableNegative3641 - 458234683.9
rhe_pe00001 family proteinAt1D1460_RS27135Not AvailablePositive4865 - 597440857.2
dead/deah box helicaseAt1D1460_RS27140Not AvailableNegative6155 - 866591970.2
hypothetical proteinAt1D1460_RS27145Not AvailableNegative8868 - 1005544855.6
hypothetical proteinAt1D1460_RS27150Not AvailablePositive10289 - 1100525737.1
res family nad+ phosphorylaseAt1D1460_RS27155Not AvailablePositive11098 - 1159818133.6
hypothetical proteinAt1D1460_RS27160Not AvailablePositive11601 - 1259335928.0
hypothetical proteinAt1D1460_RS27165Not AvailablePositive12594 - 1309418565.3

Displaying genes 1 – 10 of 4917 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
TumorsCausesPMC177831
Crown gall diseaseCausesPMC2241609
Crown gall diseaseCausesPMC2653234
Crown gall diseaseCausesPMC11575935
Crown and cane gall symptomsCausesPMC12602688
Crown and cane gallsCausesPMC12602688
Crown gall diseaseCausesPMC9343901
Crown gallCausesPMC12030312
Crown-gall diseaseCausesPMC7248198
Crown gall tumorsCausesPMC8087989

Displaying health effects 1 – 10 of 11 in total