Citrobacter freundii strain AR_0116

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter freundii strain AR_0116 is a Gram-negative, rod-shaped bacterium that demonstrates facultative anaerobic growth, indicating its ability to thrive in both aerobic and anaerobic environments. This strain is equipped with flagella, enabling motility. It has been identified in various habitats, including hospital sewage, intestinal tracts, sewage systems, soil, and surface waters, showcasing its adaptability to diverse ecosystems. Notably, C. freundii strain AR_0116 has been associated with opportunistic infections in humans and animals. In humans, it is linked to infections of the urinary and respiratory tracts. In veterinary contexts, it is known to cause respiratory tract and wound infections in horses, as well as respiratory infections in dogs and urinary tract infections in cats. Additionally, it has been implicated in infections across a wide range of hosts, including various mammals and amphibians, such as Homo sapiens, Canis lupus familiaris, and Gastrotheca riobambae. The strain has three replicons, suggesting a complex genomic structure that may contribute to its pathogenic potential and adaptability. The presence of C. freundii in both hospital sewage and environmental sources emphasizes its role in the microbiome of both human and animal health. This bacterium's ability to inhabit such varied environments, along with its potential to cause infections, underscores its significance in clinical microbiology and public health. Understanding its ecology and pathogenicity is essential for developing strategies to manage its impact on health and the environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter freundii
Strainstrain AR_0116

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter freundii strain AR_0116
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathospital sewage; intestinal tract; sewage; soil; surface waters
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Oryctolagus cuniculus
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter freundii strain AR_0116 plasmid unnamed3, complete

Gene Summary

Adenine Count

17966 bp

Thymine Count

18929 bp

Guanine Count

21517 bp

Cytosine Count

22911 bp

Genome Length

81323 bp

Protein-coding Genes

94 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type iv conjugative transfer system coupling protein tradAM363_RS02520Not AvailableNegative40061 - 4238286130.7
hypothetical proteinAM363_RS02525Not AvailableNegative42454 - 427179299.84
hypothetical proteinAM363_RS29685Not AvailableNegative42738 - 4343025761.7
hypothetical proteinAM363_RS02535Not AvailableNegative43677 - 4434825252.4
conjugal transfer mating-pair stabilization protein tragAM363_RS02540Not AvailableNegative44365 - 47190101870.0
conjugal transfer pilus assembly protein trahAM363_RS02545Not AvailableNegative47190 - 4856050223.4
hypothetical proteinAM363_RS02550Not AvailableNegative48547 - 4897516877.8
type-f conjugative transfer system pilin assembly thiol-disulfide isomerase trbbAM363_RS02555Not AvailableNegative48968 - 4954020457.5
type-f conjugative transfer system pilin chaperone traqAM363_RS02560Not AvailableNegative49512 - 497518928.05
type-f conjugative transfer system pilin assembly protein trafAM363_RS02565Not AvailableNegative49762 - 5051428175.0

Displaying genes 41 – 50 of 529 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infections in animalsCausesPMC6885840
Infections of the urinary and respiratory tracts in humansCausesPMC6885840
Respiratory tract and wound infections in horsesCausesPMC6885840
Respiratory tract infections in dogsCausesPMC6885840
Pleuritis and urinary tract infections in catsCausesPMC6885840
Bacterial infectionsCausesPMC7578172
Opportunistic infectionsCausesPMC12838003

Displaying health effects 1 – 7 of 7 in total