Escherichia coli strain 3385

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain 3385 is a Gram-negative, rod-shaped bacterium that exhibits a facultative anaerobic metabolism, thriving optimally at 37°C within a mesophilic temperature range. The strain is motile, possessing flagella, and its cellular arrangement is typically found in pairs or as single cells. E. coli 3385 is characterized by having three replicons and a double-membrane structure, which is typical for Gram-negative organisms. This strain is host-associated, meaning it can be found in various organisms, including Homo sapiens (humans), Gallus gallus (chickens), Bos taurus (cattle), and many others, encompassing a wide range of vertebrates and invertebrates. The biological interactions it has with these hosts can be classified as free-living, implying some degree of independence from a specific host. E. coli strain 3385 is known for its pathogenicity, particularly in humans, where it is linked to a spectrum of health issues. These include urinary tract infections (UTIs), gastrointestinal infections, neonatal meningitis, and other serious conditions such as hemorrhagic colitis and hemolytic uremic syndrome (HUS). The strain's ability to cause these diverse diseases highlights its significant role in both health and disease within various host species, including mammals and birds. The ecological implications of E. coli strain 3385’s pathogenicity suggest that its presence in multiple hosts could lead to zoonotic transmission and impact public health. Its association with both domestic and wild animals further underscores the importance of monitoring this strain to prevent outbreaks of foodborne and waterborne illnesses.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain 3385

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain 3385
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain 3385


Gene Summary

Adenine Count

22678 bp

Thymine Count

21551 bp

Guanine Count

23522 bp

Cytosine Count

21572 bp

Genome Length

89323 bp

Protein-coding Genes

94 genes

Non-Coding Genes

12 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
is6-like element is26 family transposaseDFS94_RS24940Not AvailablePositive2555 - 325927953.9
duf2726 domain-containing proteinDFS94_RS24945Not AvailablePositive3313 - 35318280.01
duf2726 domain-containing proteinDFS94_RS24950Not AvailablePositive3615 - 395312533.8
is66-like element accessory protein tnpaDFS94_RS24955Not AvailablePositive4033 - 443715225.4
is66 family insertion sequence element accessory protein tnpbDFS94_RS24960Not AvailablePositive4434 - 478112797.9
duf2726 domain-containing proteinDFS94_RS24965Not AvailablePositive4830 - 577532654.9
is21-like element is100 family transposaseDFS94_RS24970Not AvailablePositive5861 - 688339889.1
is21-like element is100kyp family helper atpase istbDFS94_RS24975Not AvailablePositive6880 - 766229455.8
duf2726 domain-containing proteinDFS94_RS24980Not AvailablePositive7730 - 833823011.4
duf4198 domain-containing proteinDFS94_RS24985Not AvailableNegative8401 - 919229515.9

Displaying genes 21 – 30 of 5049 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total