Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| acyl carrier protein | CPT03_RS00010 | Not Available | + | 2670 - 2969 | 11352.5 |
| alpha/beta fold hydrolase | CPT03_RS00015 | Not Available | + | 2960 - 3724 | 28841.7 |
| glycosyltransferase | CPT03_RS00020 | Not Available | + | 3717 - 4925 | 44850.3 |
| glycosyltransferase | CPT03_RS00025 | Not Available | + | 4934 - 6109 | 43546.0 |
| condensation domain-containing protein | CPT03_RS00030 | Not Available | + | 6106 - 7359 | 47712.6 |
| condensation domain-containing protein | CPT03_RS00035 | Not Available | + | 7356 - 8624 | 47460.8 |
| hypothetical protein | CPT03_RS00040 | Not Available | + | 8617 - 9117 | 18686.7 |
| tigr01212 family radical sam protein | CPT03_RS00045 | Not Available | + | 9205 - 10155 | 36339.8 |
| family 20 glycosylhydrolase | CPT03_RS00050 | Not Available | + | 10172 - 12367 | 82618.1 |
| ammonium transporter | CPT03_RS00055 | Not Available | + | 12898 - 14265 | 48309.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.