Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CPT03_RS04845 | Not Available | Positive | 1192217 - 1192399 | 6988.09 |
| 16s ribosomal rna | Not Available | Not Available | Positive | 1192953 - 1194474 | Not Available |
| Trna-ile | Not Available | Not Available | Positive | 1194648 - 1194722 | Not Available |
| Trna-ala | Not Available | Not Available | Positive | 1194738 - 1194814 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | Positive | 1195040 - 1197916 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | Positive | 1198024 - 1198135 | Not Available |
| sh3 domain-containing protein | CPT03_RS04875 | Not Available | Negative | 1198210 - 1198629 | 15249.6 |
| bon domain-containing protein | CPT03_RS04880 | Not Available | Negative | 1198646 - 1199146 | 17434.3 |
| phytanoyl-coa dioxygenase family protein | CPT03_RS04885 | Not Available | Negative | 1199373 - 1200212 | 31613.4 |
| ycii family protein | CPT03_RS04890 | Not Available | Positive | 1200396 - 1200863 | 17290.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

