Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | CPT03_RS04450 | Not Available | Positive | 1096090 - 1099227 | 116036.0 |
| ragb/susd family nutrient uptake outer membrane protein | CPT03_RS04455 | Not Available | Positive | 1099239 - 1100783 | 59101.4 |
| hypothetical protein | CPT03_RS04460 | Not Available | Positive | 1100796 - 1101551 | 28680.2 |
| glycoside hydrolase family 2 protein | CPT03_RS04465 | Not Available | Positive | 1101562 - 1104015 | 92553.2 |
| glycosyl hydrolase family 95 catalytic domain-containing protein | CPT03_RS04470 | Not Available | Positive | 1104025 - 1106577 | 95585.4 |
| tim-barrel domain-containing protein | CPT03_RS04475 | Not Available | Positive | 1106588 - 1108735 | 80743.0 |
| alginate lyase family protein | CPT03_RS04480 | Not Available | Positive | 1108741 - 1109904 | 44280.5 |
| glycoside hydrolase family 88 protein | CPT03_RS04485 | Not Available | Positive | 1109926 - 1111131 | 45505.9 |
| heparin lyase i family protein | CPT03_RS04490 | Not Available | Positive | 1111207 - 1111986 | 28712.2 |
| alpha-l-fucosidase | CPT03_RS04495 | Not Available | Positive | 1111999 - 1113435 | 54065.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

