Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 26 protein | CPT03_RS04400 | Not Available | Positive | 1076284 - 1077405 | 42782.6 |
| hybrid sensor histidine kinase/response regulator transcription factor | CPT03_RS04405 | Not Available | Positive | 1077461 - 1081657 | 159973.0 |
| susc/raga family tonb-linked outer membrane protein | CPT03_RS04410 | Not Available | Positive | 1081786 - 1084968 | 115396.0 |
| ragb/susd family nutrient uptake outer membrane protein | CPT03_RS04415 | Not Available | Positive | 1084987 - 1086585 | 58497.3 |
| ipt/tig domain-containing protein | CPT03_RS04420 | Not Available | Positive | 1086588 - 1087649 | 37907.8 |
| hypothetical protein | CPT03_RS04425 | Not Available | Positive | 1087771 - 1088121 | 13654.2 |
| porin family protein | CPT03_RS04430 | Not Available | Positive | 1088173 - 1088925 | 28290.7 |
| fad-dependent oxidoreductase | CPT03_RS04435 | Not Available | Positive | 1089098 - 1090771 | 62649.4 |
| hybrid sensor histidine kinase/response regulator transcription factor | CPT03_RS04440 | Not Available | Positive | 1090840 - 1094919 | 154457.0 |
| arac family transcriptional regulator | CPT03_RS04445 | Not Available | Positive | 1095034 - 1095912 | 33966.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

