Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| right-handed parallel beta-helix repeat-containing protein | CPT03_RS04055 | Not Available | Positive | 974926 - 976566 | 59575.2 |
| alginate lyase family protein | CPT03_RS04060 | Not Available | Positive | 976576 - 977766 | 44334.9 |
| gh39 family glycosyl hydrolase | CPT03_RS04065 | Not Available | Positive | 977888 - 979576 | 63256.8 |
| class i fructose-bisphosphate aldolase | CPT03_RS04070 | Not Available | Positive | 979685 - 980695 | 37157.4 |
| rna polymerase sigma factor | CPT03_RS04075 | Not Available | Negative | 980700 - 981281 | 22638.3 |
| fecr family protein | CPT03_RS04080 | Not Available | Positive | 981428 - 982441 | 38952.6 |
| susc/raga family tonb-linked outer membrane protein | CPT03_RS04085 | Not Available | Positive | 982616 - 985906 | 120278.0 |
| ragb/susd family nutrient uptake outer membrane protein | CPT03_RS04090 | Not Available | Positive | 985923 - 987818 | 69992.8 |
| duf5018-related domain-containing protein | CPT03_RS04095 | Not Available | Positive | 987835 - 988311 | 17288.0 |
| glycoside hydrolase domain-containing protein | CPT03_RS04100 | Not Available | Positive | 988398 - 991325 | 110938.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

