Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CPT03_RS04005 | Not Available | Positive | 956938 - 957156 | 8257.66 |
| glycoside hydrolase family 88 protein | CPT03_RS04010 | Not Available | Positive | 957231 - 958457 | 45802.6 |
| two-component regulator propeller domain-containing protein | CPT03_RS04015 | Not Available | Positive | 958485 - 962624 | 156426.0 |
| rna polymerase sigma factor | CPT03_RS04020 | Not Available | Positive | 962801 - 963367 | 22116.8 |
| glycoside hydrolase family 97 protein | CPT03_RS04025 | Not Available | Positive | 963357 - 965276 | 73146.4 |
| hypothetical protein | CPT03_RS04030 | Not Available | Positive | 965335 - 966972 | 60954.2 |
| alginate lyase family protein | CPT03_RS04035 | Not Available | Negative | 967031 - 968329 | 48019.7 |
| ipt/tig domain-containing protein | CPT03_RS04040 | Not Available | Negative | 968437 - 969471 | 37056.1 |
| ragb/susd family nutrient uptake outer membrane protein | CPT03_RS04045 | Not Available | Negative | 969520 - 971295 | 65467.0 |
| susc/raga family tonb-linked outer membrane protein | CPT03_RS04050 | Not Available | Negative | 971317 - 974595 | 120464.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

