Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histone h1 | CPT03_RS03955 | Not Available | Positive | 940457 - 940636 | 6540.86 |
| pas domain-containing sensor histidine kinase | CPT03_RS03960 | Not Available | Negative | 940742 - 941920 | 44833.7 |
| bestrophin family protein | CPT03_RS03965 | Not Available | Positive | 942218 - 943129 | 34917.8 |
| rna polymerase sigma-70 factor | CPT03_RS03970 | Not Available | Positive | 943236 - 943811 | 22422.0 |
| fecr family protein | CPT03_RS03975 | Not Available | Positive | 943884 - 944900 | 38399.2 |
| susc/raga family tonb-linked outer membrane protein | CPT03_RS03980 | Not Available | Positive | 945143 - 948451 | 121102.0 |
| ragb/susd family nutrient uptake outer membrane protein | CPT03_RS03985 | Not Available | Positive | 948462 - 950060 | 60016.9 |
| glycoside hydrolase family 28 protein | CPT03_RS03990 | Not Available | Positive | 950135 - 951613 | 53611.1 |
| gh92 family glycosyl hydrolase | CPT03_RS03995 | Not Available | Positive | 951610 - 953859 | 84288.2 |
| glycoside hydrolase family 2 protein | CPT03_RS04000 | Not Available | Positive | 954096 - 956855 | 103786.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

