Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipid a deacylase lpxr family protein | CPT03_RS00365 | Not Available | Negative | 89153 - 90106 | 35571.9 |
| hypothetical protein | CPT03_RS00370 | Not Available | Negative | 90167 - 90667 | 18144.6 |
| endopeptidase la | CPT03_RS00375 | Not Available | Negative | 90708 - 93179 | 92205.8 |
| tetratricopeptide repeat protein | CPT03_RS00380 | Not Available | Positive | 93498 - 94124 | 23718.4 |
| hypothetical protein | CPT03_RS00385 | Not Available | Negative | 94183 - 94713 | 20332.8 |
| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | CPT03_RS00390 | Not Available | Negative | 94714 - 96234 | 55835.2 |
| duf4783 domain-containing protein | CPT03_RS00395 | Not Available | Positive | 96359 - 96829 | 17561.4 |
| carboxylating nicotinate-nucleotide diphosphorylase | CPT03_RS00400 | Not Available | Positive | 96865 - 97707 | 30534.0 |
| glycerol-3-phosphate 1-o-acyltransferase plsy | CPT03_RS00405 | Not Available | Positive | 97711 - 98361 | 23284.1 |
| m48 family metallopeptidase | CPT03_RS00410 | Not Available | Positive | 98372 - 99199 | 29961.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

