Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | CPT03_RS03850 | Not Available | Positive | 909567 - 911270 | 63692.0 |
| glycoside hydrolase family 35 protein | CPT03_RS03855 | Not Available | Positive | 911348 - 913174 | 69222.3 |
| duf2652 domain-containing protein | CPT03_RS03860 | Not Available | Negative | 913213 - 914277 | 41003.1 |
| rna polymerase sigma factor | CPT03_RS03865 | Not Available | Positive | 914674 - 915288 | 23964.0 |
| outer membrane beta-barrel family protein | CPT03_RS03870 | Not Available | Negative | 915329 - 917764 | 89506.5 |
| hypothetical protein | CPT03_RS03875 | Not Available | Negative | 917887 - 918222 | 12792.3 |
| rna polymerase sigma factor | CPT03_RS03880 | Not Available | Positive | 918422 - 918979 | 22459.2 |
| hypothetical protein | CPT03_RS03885 | Not Available | Positive | 918976 - 919380 | 15442.6 |
| fecr family protein | CPT03_RS03890 | Not Available | Positive | 919468 - 920652 | 43975.0 |
| tonb-dependent receptor | CPT03_RS03895 | Not Available | Positive | 920828 - 924148 | 119985.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

