Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-phosphoserine/phosphohydroxythreonine transaminase | CPT03_RS00315 | Not Available | Positive | 77577 - 78680 | 41078.6 |
| rna polymerase sigma factor rpod/siga | CPT03_RS00320 | Not Available | Positive | 78688 - 79542 | 32654.6 |
| hypothetical protein | CPT03_RS00325 | Not Available | Negative | 79604 - 79807 | 6853.42 |
| sensor histidine kinase | CPT03_RS00330 | Not Available | Negative | 79885 - 81198 | 50090.9 |
| response regulator transcription factor | CPT03_RS00335 | Not Available | Negative | 81227 - 81904 | 25917.3 |
| efflux transporter outer membrane subunit | CPT03_RS00340 | Not Available | Negative | 82006 - 83406 | 51273.8 |
| efflux rnd transporter permease subunit | CPT03_RS00345 | Not Available | Negative | 83417 - 86593 | 115065.0 |
| efflux rnd transporter periplasmic adaptor subunit | CPT03_RS00350 | Not Available | Negative | 86639 - 87805 | 41661.9 |
| (d)cmp kinase | CPT03_RS00355 | Not Available | Negative | 87967 - 88647 | 25614.3 |
| alternative ribosome rescue aminoacyl-trna hydrolase arfb | CPT03_RS00360 | Not Available | Positive | 88738 - 89148 | 15618.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

