Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nifu family protein | CPT03_RS02960 | Not Available | Negative | 721277 - 721825 | 20298.1 |
| adenylosuccinate lyase | CPT03_RS02965 | Not Available | Negative | 721903 - 723249 | 50544.1 |
| hypothetical protein | CPT03_RS02970 | Not Available | Negative | 723387 - 723599 | 7290.4 |
| rna polymerase sigma factor | CPT03_RS02975 | Not Available | Positive | 723807 - 724373 | 21908.1 |
| s1c family serine protease | CPT03_RS02980 | Not Available | Positive | 724375 - 725463 | 39805.5 |
| dmt family protein | CPT03_RS02985 | Not Available | Negative | 725537 - 725905 | 14090.4 |
| duf72 domain-containing protein | CPT03_RS02990 | Not Available | Positive | 725984 - 726910 | 35517.6 |
| peroxiredoxin | CPT03_RS02995 | Not Available | Positive | 726971 - 727606 | 23564.9 |
| duf2723 domain-containing protein | CPT03_RS03000 | Not Available | Negative | 727658 - 730651 | 113752.0 |
| tetratricopeptide repeat protein | CPT03_RS03005 | Not Available | Negative | 730958 - 731986 | 38081.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

