Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uracil-dna glycosylase | CPT03_RS02760 | Not Available | Negative | 678150 - 678827 | 25241.2 |
| thioredoxin family protein | CPT03_RS02765 | Not Available | Negative | 678830 - 679303 | 17682.2 |
| hypothetical protein | CPT03_RS02770 | Not Available | Positive | 679450 - 679989 | 20832.2 |
| hypothetical protein | CPT03_RS02775 | Not Available | Negative | 680023 - 680241 | 8665.16 |
| hypothetical protein | CPT03_RS02780 | Not Available | Negative | 680329 - 682049 | 65428.6 |
| amp-dependent synthetase/ligase | CPT03_RS02785 | Not Available | Negative | 682193 - 684106 | 72140.1 |
| hesb/isca family protein | CPT03_RS02790 | Not Available | Negative | 684240 - 684566 | 11922.9 |
| fe-s cluster assembly scaffold iscu | CPT03_RS02795 | Not Available | Negative | 684629 - 685042 | 14869.7 |
| iscs subfamily cysteine desulfurase | CPT03_RS02800 | Not Available | Negative | 685159 - 686370 | 44257.1 |
| methylmalonyl-coa epimerase | CPT03_RS02805 | Not Available | Positive | 686496 - 686897 | 14841.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

