Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lrp/asnc family transcriptional regulator | CPT03_RS02660 | Not Available | Negative | 660816 - 661289 | 18124.1 |
| large conductance mechanosensitive channel protein mscl | CPT03_RS02665 | Not Available | Positive | 661724 - 662152 | 15094.0 |
| chan family lipoprotein | CPT03_RS02670 | Not Available | Negative | 662154 - 663020 | 33069.0 |
| liaf transmembrane domain-containing protein | CPT03_RS02675 | Not Available | Positive | 663159 - 663932 | 29036.2 |
| duf4288 domain-containing protein | CPT03_RS02680 | Not Available | Positive | 663944 - 664315 | 14219.8 |
| sensor histidine kinase | CPT03_RS02685 | Not Available | Positive | 664689 - 665366 | 25641.1 |
| lytr/algr family response regulator transcription factor | CPT03_RS02690 | Not Available | Positive | 665344 - 666084 | 27990.9 |
| 50s ribosomal protein l34 | CPT03_RS02695 | Not Available | Positive | 666173 - 666331 | 6261.66 |
| ribonuclease p protein component | CPT03_RS02700 | Not Available | Positive | 666396 - 666809 | 16226.9 |
| membrane protein insertion efficiency factor yidd | CPT03_RS02705 | Not Available | Positive | 666796 - 667026 | 8449.57 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

