Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-dehydroquinate synthase | CPT03_RS02360 | Not Available | Negative | 581489 - 582568 | 40055.9 |
| rna-binding s4 domain-containing protein | CPT03_RS02365 | Not Available | Negative | 582568 - 582774 | 7623.53 |
| proline dehydrogenase family protein | CPT03_RS02370 | Not Available | Positive | 582897 - 584081 | 44881.1 |
| duf962 domain-containing protein | CPT03_RS02375 | Not Available | Negative | 584135 - 584455 | 12406.3 |
| had family hydrolase | CPT03_RS02380 | Not Available | Negative | 584469 - 585122 | 25307.0 |
| Trna-met | Not Available | Not Available | Positive | 585175 - 585248 | Not Available |
| glycoside hydrolase family 5 protein | CPT03_RS02390 | Not Available | Negative | 585439 - 586440 | 37570.2 |
| susc/raga family tonb-linked outer membrane protein | CPT03_RS02395 | Not Available | Positive | 587068 - 590235 | 115175.0 |
| ragb/susd family nutrient uptake outer membrane protein | CPT03_RS02400 | Not Available | Positive | 590246 - 591823 | 57766.7 |
| glycan-binding surface protein | CPT03_RS02405 | Not Available | Positive | 591853 - 593067 | 43756.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

