Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mbl fold metallo-hydrolase | CPT03_RS02310 | Not Available | Negative | 569952 - 570641 | 25740.5 |
| hypothetical protein | CPT03_RS02315 | Not Available | Positive | 571640 - 571846 | 7899.53 |
| Tmrna,resume consensus sequence (at 89): tataattggcgaaaataa | Not Available | Not Available | Positive | 572015 - 572379 | Not Available |
| pyridoxal phosphate-dependent aminotransferase | CPT03_RS02325 | Not Available | Negative | 572449 - 573651 | 44557.6 |
| duf1573 domain-containing protein | CPT03_RS02330 | Not Available | Negative | 573716 - 574105 | 13985.1 |
| thiamine pyrophosphate-dependent enzyme | CPT03_RS02335 | Not Available | Positive | 574237 - 576660 | 89764.4 |
| chorismate synthase | CPT03_RS02340 | Not Available | Negative | 576791 - 577882 | 38948.4 |
| 3-phosphoshikimate 1-carboxyvinyltransferase | CPT03_RS02345 | Not Available | Negative | 577907 - 579160 | 45833.2 |
| chorismate mutase | CPT03_RS02350 | Not Available | Negative | 579163 - 580302 | 41857.7 |
| prephenate dehydratase | CPT03_RS02355 | Not Available | Negative | 580358 - 581191 | 31716.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

