Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | CPT03_RS02215 | Not Available | Positive | 545696 - 545896 | 7285.23 |
| beta-1,6-n-acetylglucosaminyltransferase | CPT03_RS02220 | Not Available | Negative | 546479 - 547375 | 34915.7 |
| hypothetical protein | CPT03_RS22730 | Not Available | Positive | 548290 - 548433 | 5500.64 |
| helix-turn-helix domain-containing protein | CPT03_RS02225 | Not Available | Positive | 549080 - 549475 | 15384.7 |
| peptidase domain-containing abc transporter | CPT03_RS02235 | Not Available | Positive | 550143 - 552317 | 81883.3 |
| hlyd family efflux transporter periplasmic adaptor subunit | CPT03_RS02240 | Not Available | Positive | 552331 - 553629 | 50161.4 |
| hypothetical protein | CPT03_RS02245 | Not Available | Positive | 553629 - 554573 | 36824.5 |
| glycosyltransferase | CPT03_RS02250 | Not Available | Positive | 554557 - 555798 | 45626.2 |
| lanthionine synthetase lanc family protein | CPT03_RS02255 | Not Available | Positive | 555795 - 557009 | 45598.4 |
| lantibiotic dehydratase | CPT03_RS02260 | Not Available | Positive | 557033 - 560125 | 119718.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

