Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | CPT03_RS22340 | Not Available | Positive | 5261096 - 5262937 | 70106.0 |
| duf4974 domain-containing protein | CPT03_RS22345 | Not Available | Positive | 5262999 - 5263757 | 28906.6 |
| sugar mfs transporter | CPT03_RS22350 | Not Available | Positive | 5263984 - 5265261 | 46008.6 |
| response regulator | CPT03_RS22355 | Not Available | Positive | 5265455 - 5267524 | 77651.3 |
| thioredoxin-dependent thiol peroxidase | CPT03_RS22360 | Not Available | Negative | 5267521 - 5267979 | 16978.2 |
| hypothetical protein | CPT03_RS23200 | Not Available | Negative | 5267984 - 5268214 | 8755.45 |
| m23 family metallopeptidase | CPT03_RS22365 | Not Available | Negative | 5268307 - 5269524 | 45470.6 |
| hypothetical protein | CPT03_RS23205 | Not Available | Negative | 5269548 - 5269703 | 5883.32 |
| fumarylacetoacetate hydrolase family protein | CPT03_RS22370 | Not Available | Negative | 5269709 - 5270320 | 23047.6 |
| t9ss type a sorting domain-containing protein | CPT03_RS22375 | Not Available | Negative | 5270408 - 5270929 | 19393.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

