Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CPT03_RS22290 | Not Available | Negative | 5253274 - 5253717 | 17659.5 |
| hypothetical protein | CPT03_RS22295 | Not Available | Negative | 5253727 - 5254254 | 19776.2 |
| rna polymerase sigma factor | CPT03_RS22300 | Not Available | Negative | 5254289 - 5254849 | 21969.2 |
| transketolase family protein | CPT03_RS22305 | Not Available | Negative | 5254874 - 5255833 | 34553.8 |
| transketolase | CPT03_RS22310 | Not Available | Negative | 5255940 - 5256785 | 30725.6 |
| rna polymerase sigma factor | CPT03_RS22315 | Not Available | Positive | 5257071 - 5257616 | 21229.4 |
| hypothetical protein | CPT03_RS22320 | Not Available | Negative | 5257630 - 5258334 | 26443.7 |
| intradiol ring-cleavage dioxygenase | CPT03_RS22325 | Not Available | Negative | 5258337 - 5259062 | 25669.9 |
| sensor histidine kinase | CPT03_RS22330 | Not Available | Positive | 5259214 - 5260341 | 43854.6 |
| lytr/algr family response regulator transcription factor | CPT03_RS22335 | Not Available | Positive | 5260376 - 5261083 | 27401.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

