Pedobacter ginsengisoli strain T01R-27

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter ginsengisoli strain T01R-27 is a bacterial strain characterized by the presence of flagella, which suggests motility capabilities that may enhance its ecological adaptability. This strain contains a single replicon, indicating a streamlined genetic organization that may facilitate efficient replication and gene expression. The genomic information for Pedobacter ginsengisoli T01R-27 is accessible under the accession number NZ_CP024091.1, providing a valuable resource for further study and characterization. The presence of flagella in Pedobacter ginsengisoli T01R-27 may play a significant role in its ecological interactions, allowing for movement towards favorable environments or away from adverse conditions. This motility can be crucial for survival in diverse habitats, especially in soil environments where nutrient availability can fluctuate. Overall, understanding the traits of Pedobacter ginsengisoli strain T01R-27, particularly its motility and genetic structure, can provide insights into its ecological roles and potential applications in biotechnology or environmental microbiology. Further research into this strain could reveal its interactions within microbial communities and its contributions to soil health and nutrient cycling.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter ginsengisoli
Strainstrain T01R-27

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter ginsengisoli strain T01R-27 chromosome, complete

Gene Summary

Adenine Count

1674046 bp

Thymine Count

1667241 bp

Guanine Count

1014742 bp

Cytosine Count

1017331 bp

Genome Length

5373360 bp

Protein-coding Genes

4490 genes

Non-Coding Genes

72 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nucleoside deaminaseCPT03_RS22240Not AvailableNegative5240503 - 524098518063.9
omph family outer membrane proteinCPT03_RS22245Not AvailableNegative5241051 - 524164721749.7
dna topoisomerase (atp-hydrolyzing) subunit bCPT03_RS22250Not AvailablePositive5241861 - 524381972306.0
retropepsin-like aspartic proteaseCPT03_RS22255Not AvailableNegative5244060 - 524448215653.2
malate dehydrogenaseCPT03_RS22260Not AvailableNegative5244506 - 524544433074.2
lipocalin family proteinCPT03_RS22265Not AvailablePositive5245544 - 524607420240.4
dna polymerase iii subunit alphaCPT03_RS22270Not AvailablePositive5246169 - 5250596166993.0
thioredoxinCPT03_RS22275Not AvailablePositive5250746 - 525106311622.0
duf58 domain-containing proteinCPT03_RS22280Not AvailablePositive5251129 - 525204935667.8
aspartate aminotransferase family proteinCPT03_RS22285Not AvailableNegative5252114 - 525323840998.9

Displaying genes 4461 – 4470 of 4562 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.