Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nucleoside deaminase | CPT03_RS22240 | Not Available | Negative | 5240503 - 5240985 | 18063.9 |
| omph family outer membrane protein | CPT03_RS22245 | Not Available | Negative | 5241051 - 5241647 | 21749.7 |
| dna topoisomerase (atp-hydrolyzing) subunit b | CPT03_RS22250 | Not Available | Positive | 5241861 - 5243819 | 72306.0 |
| retropepsin-like aspartic protease | CPT03_RS22255 | Not Available | Negative | 5244060 - 5244482 | 15653.2 |
| malate dehydrogenase | CPT03_RS22260 | Not Available | Negative | 5244506 - 5245444 | 33074.2 |
| lipocalin family protein | CPT03_RS22265 | Not Available | Positive | 5245544 - 5246074 | 20240.4 |
| dna polymerase iii subunit alpha | CPT03_RS22270 | Not Available | Positive | 5246169 - 5250596 | 166993.0 |
| thioredoxin | CPT03_RS22275 | Not Available | Positive | 5250746 - 5251063 | 11622.0 |
| duf58 domain-containing protein | CPT03_RS22280 | Not Available | Positive | 5251129 - 5252049 | 35667.8 |
| aspartate aminotransferase family protein | CPT03_RS22285 | Not Available | Negative | 5252114 - 5253238 | 40998.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

