Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-directed rna polymerase subunit beta' | CPT03_RS22190 | Not Available | Positive | 5228722 - 5233008 | 159815.0 |
| duf3467 domain-containing protein | CPT03_RS22195 | Not Available | Positive | 5233094 - 5233408 | 11649.9 |
| trna (adenosine(37)-n6)-dimethylallyltransferase miaa | CPT03_RS22200 | Not Available | Negative | 5233405 - 5234313 | 34175.9 |
| is1096 element passenger tnpr family protein | CPT03_RS22205 | Not Available | Negative | 5234322 - 5234975 | 25248.6 |
| cca trna nucleotidyltransferase | CPT03_RS22210 | Not Available | Negative | 5235033 - 5236439 | 53121.7 |
| l-threonylcarbamoyladenylate synthase | CPT03_RS22215 | Not Available | Negative | 5236466 - 5237032 | 20735.6 |
| glycosyltransferase family 4 protein | CPT03_RS22220 | Not Available | Positive | 5237185 - 5238327 | 42463.7 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase | CPT03_RS22225 | Not Available | Negative | 5238370 - 5239188 | 29606.2 |
| rna-binding s4 domain-containing protein | CPT03_RS22230 | Not Available | Positive | 5239317 - 5239718 | 15198.3 |
| ecsc family protein | CPT03_RS22235 | Not Available | Negative | 5239719 - 5240444 | 27267.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

