Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| luxr c-terminal-related transcriptional regulator | CPT03_RS22090 | Not Available | Positive | 5214240 - 5214977 | 28231.7 |
| atp-binding protein | CPT03_RS22095 | Not Available | Negative | 5214978 - 5216027 | 39486.7 |
| acyl-coa dehydrogenase family protein | CPT03_RS22100 | Not Available | Positive | 5216223 - 5217395 | 42421.0 |
| hypothetical protein | CPT03_RS22105 | Not Available | Negative | 5217498 - 5217869 | 14254.5 |
| 30s ribosomal protein s21 | CPT03_RS22110 | Not Available | Positive | 5218025 - 5218219 | 7549.43 |
| tyrosine-type recombinase/integrase | CPT03_RS22115 | Not Available | Positive | 5218349 - 5219233 | 33802.7 |
| ribosome hibernation-promoting factor, hpf/yfia family | CPT03_RS22120 | Not Available | Positive | 5219250 - 5219597 | 13242.9 |
| Trna-thr | Not Available | Not Available | Positive | 5219807 - 5219879 | Not Available |
| Trna-tyr | Not Available | Not Available | Positive | 5219888 - 5219970 | Not Available |
| Trna-gly | Not Available | Not Available | Positive | 5219981 - 5220053 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

