Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rod shape-determining protein mred | CPT03_RS21985 | Not Available | Negative | 5191980 - 5192402 | 16128.3 |
| rod shape-determining protein mrec | CPT03_RS21990 | Not Available | Negative | 5192485 - 5193324 | 31275.5 |
| rod shape-determining protein | CPT03_RS21995 | Not Available | Negative | 5193368 - 5194390 | 36830.1 |
| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolase | CPT03_RS22000 | Not Available | Negative | 5194480 - 5196006 | 55897.7 |
| c-type cytochrome | CPT03_RS22005 | Not Available | Negative | 5196131 - 5196556 | 15781.5 |
| phosphoribosylglycinamide formyltransferase | CPT03_RS22010 | Not Available | Negative | 5196571 - 5197149 | 22165.7 |
| 30s ribosomal protein s20 | CPT03_RS22020 | Not Available | Positive | 5197577 - 5197831 | 9672.1 |
| radc family protein | CPT03_RS22025 | Not Available | Positive | 5197902 - 5198600 | 25709.3 |
| phenylalanine--trna ligase subunit beta | CPT03_RS22030 | Not Available | Positive | 5198682 - 5201081 | 88202.6 |
| hypothetical protein | CPT03_RS22035 | Not Available | Positive | 5201134 - 5201424 | 10885.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

