Pedobacter ginsengisoli strain T01R-27

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter ginsengisoli strain T01R-27 is a bacterial strain characterized by the presence of flagella, which suggests motility capabilities that may enhance its ecological adaptability. This strain contains a single replicon, indicating a streamlined genetic organization that may facilitate efficient replication and gene expression. The genomic information for Pedobacter ginsengisoli T01R-27 is accessible under the accession number NZ_CP024091.1, providing a valuable resource for further study and characterization. The presence of flagella in Pedobacter ginsengisoli T01R-27 may play a significant role in its ecological interactions, allowing for movement towards favorable environments or away from adverse conditions. This motility can be crucial for survival in diverse habitats, especially in soil environments where nutrient availability can fluctuate. Overall, understanding the traits of Pedobacter ginsengisoli strain T01R-27, particularly its motility and genetic structure, can provide insights into its ecological roles and potential applications in biotechnology or environmental microbiology. Further research into this strain could reveal its interactions within microbial communities and its contributions to soil health and nutrient cycling.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter ginsengisoli
Strainstrain T01R-27

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter ginsengisoli strain T01R-27 chromosome, complete

Gene Summary

Adenine Count

1674046 bp

Thymine Count

1667241 bp

Guanine Count

1014742 bp

Cytosine Count

1017331 bp

Genome Length

5373360 bp

Protein-coding Genes

4490 genes

Non-Coding Genes

72 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
alpha-ketoglutarate-dependent dioxygenase alkbCPT03_RS21840Not AvailablePositive5161180 - 51613536652.33
hypothetical proteinCPT03_RS21845Not AvailablePositive5161400 - 51616488936.99
kelch repeat-containing proteinCPT03_RS21850Not AvailablePositive5161908 - 516412785348.3
alpha-l-fucosidaseCPT03_RS21855Not AvailablePositive5164308 - 516583457407.7
atp-binding proteinCPT03_RS21860Not AvailablePositive5166072 - 516719342815.1
hypothetical proteinCPT03_RS22860Not AvailableNegative5167560 - 51677306372.53
Trna-pseudoNot AvailableNot AvailablePositive5167806 - 5167869Not Available
tyrosine-type recombinase/integraseCPT03_RS21865Not AvailablePositive5167933 - 516906343569.9
hypothetical proteinCPT03_RS21870Not AvailableNegative5169296 - 516978117847.6
endonuclease/exonuclease/phosphatase family proteinCPT03_RS21875Not AvailableNegative5170183 - 517091428883.4

Displaying genes 4381 – 4390 of 4562 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.