Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-ketoglutarate-dependent dioxygenase alkb | CPT03_RS21840 | Not Available | Positive | 5161180 - 5161353 | 6652.33 |
| hypothetical protein | CPT03_RS21845 | Not Available | Positive | 5161400 - 5161648 | 8936.99 |
| kelch repeat-containing protein | CPT03_RS21850 | Not Available | Positive | 5161908 - 5164127 | 85348.3 |
| alpha-l-fucosidase | CPT03_RS21855 | Not Available | Positive | 5164308 - 5165834 | 57407.7 |
| atp-binding protein | CPT03_RS21860 | Not Available | Positive | 5166072 - 5167193 | 42815.1 |
| hypothetical protein | CPT03_RS22860 | Not Available | Negative | 5167560 - 5167730 | 6372.53 |
| Trna-pseudo | Not Available | Not Available | Positive | 5167806 - 5167869 | Not Available |
| tyrosine-type recombinase/integrase | CPT03_RS21865 | Not Available | Positive | 5167933 - 5169063 | 43569.9 |
| hypothetical protein | CPT03_RS21870 | Not Available | Negative | 5169296 - 5169781 | 17847.6 |
| endonuclease/exonuclease/phosphatase family protein | CPT03_RS21875 | Not Available | Negative | 5170183 - 5170914 | 28883.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

