Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gluconate 2-dehydrogenase subunit 3 family protein | CPT03_RS21540 | Not Available | Positive | 5104886 - 5105512 | 22944.6 |
| carboxymuconolactone decarboxylase family protein | CPT03_RS21545 | Not Available | Negative | 5105513 - 5105947 | 16384.5 |
| crp/fnr family transcriptional regulator | CPT03_RS21550 | Not Available | Negative | 5106019 - 5106501 | 19080.4 |
| hypothetical protein | CPT03_RS21555 | Not Available | Negative | 5106592 - 5106858 | 10407.3 |
| dicarboxylate/amino acid:cation symporter | CPT03_RS21560 | Not Available | Positive | 5106905 - 5108179 | 46051.7 |
| duf1080 domain-containing protein | CPT03_RS21565 | Not Available | Positive | 5108226 - 5109050 | 30745.6 |
| hypothetical protein | CPT03_RS21570 | Not Available | Negative | 5109057 - 5109488 | 16909.3 |
| succinate--coa ligase subunit alpha | CPT03_RS21575 | Not Available | Positive | 5109746 - 5110618 | 29812.3 |
| methionine-r-sulfoxide reductase | CPT03_RS21580 | Not Available | Positive | 5110762 - 5111241 | 17769.4 |
| septal ring lytic transglycosylase rlpa family protein | CPT03_RS21585 | Not Available | Positive | 5111321 - 5111785 | 16730.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

