Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| asparagine synthetase b | CPT03_RS21440 | Not Available | Negative | 5078075 - 5079256 | 44393.2 |
| peptidylprolyl isomerase | CPT03_RS21445 | Not Available | Positive | 5079476 - 5079937 | 16765.7 |
| duf5606 domain-containing protein | CPT03_RS21450 | Not Available | Positive | 5079939 - 5080478 | 19288.3 |
| 23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmh | CPT03_RS21455 | Not Available | Negative | 5080723 - 5081196 | 18228.3 |
| muts-related protein | CPT03_RS21460 | Not Available | Positive | 5081275 - 5083101 | 68857.1 |
| gh1 family beta-glucosidase | CPT03_RS21465 | Not Available | Positive | 5083138 - 5084478 | 50622.4 |
| doxx family protein | CPT03_RS21470 | Not Available | Negative | 5084734 - 5085171 | 16206.7 |
| glycoside hydrolase family 97 protein | CPT03_RS21475 | Not Available | Positive | 5085403 - 5087367 | 73956.5 |
| aconitate hydratase | CPT03_RS21480 | Not Available | Negative | 5087438 - 5089714 | 81832.6 |
| polysaccharide deacetylase family protein | CPT03_RS21485 | Not Available | Negative | 5090006 - 5090623 | 24000.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

