Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s13 | CPT03_RS21340 | Not Available | Positive | 5055887 - 5056264 | 14059.2 |
| 30s ribosomal protein s11 | CPT03_RS21345 | Not Available | Positive | 5056287 - 5056676 | 13802.8 |
| 30s ribosomal protein s4 | CPT03_RS21350 | Not Available | Positive | 5056742 - 5057350 | 22999.6 |
| dna-directed rna polymerase subunit alpha | CPT03_RS21355 | Not Available | Positive | 5057426 - 5058418 | 37212.9 |
| 50s ribosomal protein l17 | CPT03_RS21360 | Not Available | Positive | 5058511 - 5059038 | 19522.3 |
| class i sam-dependent methyltransferase | CPT03_RS21365 | Not Available | Positive | 5059129 - 5060319 | 45099.4 |
| molecular chaperone dnak | CPT03_RS21370 | Not Available | Positive | 5060483 - 5062393 | 68415.0 |
| nucleotidyltransferase family protein | CPT03_RS21375 | Not Available | Negative | 5062468 - 5063370 | 34015.3 |
| helicase hera-like domain-containing protein | CPT03_RS21380 | Not Available | Negative | 5063474 - 5065018 | 55967.4 |
| m42 family metallopeptidase | CPT03_RS21385 | Not Available | Negative | 5065124 - 5066239 | 41516.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

