Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tatd family hydrolase | CPT03_RS21040 | Not Available | Positive | 5000266 - 5001033 | 29029.9 |
| asparaginase | CPT03_RS21045 | Not Available | Positive | 5001036 - 5002052 | 37532.6 |
| mbl fold metallo-hydrolase | CPT03_RS21050 | Not Available | Positive | 5002107 - 5003528 | 51543.7 |
| alpha/beta hydrolase | CPT03_RS21055 | Not Available | Negative | 5003533 - 5004525 | 36809.7 |
| polyprenyl synthetase family protein | CPT03_RS21060 | Not Available | Positive | 5004597 - 5005568 | 36418.2 |
| m28 family peptidase | CPT03_RS21065 | Not Available | Positive | 5005618 - 5007060 | 52337.1 |
| duf47 domain-containing protein | CPT03_RS21070 | Not Available | Negative | 5007072 - 5007713 | 24181.6 |
| deor/glpr family dna-binding transcription regulator | CPT03_RS21075 | Not Available | Negative | 5007781 - 5008545 | 27670.5 |
| glycerol-3-phosphate dehydrogenase/oxidase | CPT03_RS21080 | Not Available | Positive | 5008747 - 5010309 | 56893.8 |
| susc/raga family tonb-linked outer membrane protein | CPT03_RS21085 | Not Available | Positive | 5010446 - 5013712 | 119213.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

