Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acetyl-alpha-d-glucosaminyl l-malate synthase bsha | CPT03_RS20945 | Not Available | Positive | 4980539 - 4981684 | 42666.4 |
| lactonase family protein | CPT03_RS20950 | Not Available | Negative | 4981747 - 4982859 | 40324.4 |
| pseudouridine synthase | CPT03_RS20955 | Not Available | Negative | 4982868 - 4984199 | 50573.9 |
| lytic transglycosylase domain-containing protein | CPT03_RS20960 | Not Available | Positive | 4984569 - 4985306 | 27656.4 |
| ferredoxin--nadp reductase | CPT03_RS20965 | Not Available | Positive | 4985408 - 4986451 | 39422.6 |
| excinuclease abc subunit uvra | CPT03_RS20970 | Not Available | Positive | 4986542 - 4989385 | 105754.0 |
| nad(p)h-hydrate dehydratase | CPT03_RS20975 | Not Available | Positive | 4989389 - 4990324 | 33470.6 |
| anti-sigma factor domain-containing protein | CPT03_RS20980 | Not Available | Negative | 4990331 - 4991209 | 32139.9 |
| rna polymerase sigma factor | CPT03_RS20985 | Not Available | Negative | 4991211 - 4991762 | 20848.2 |
| lipoyl synthase | CPT03_RS20990 | Not Available | Negative | 4991829 - 4992707 | 32965.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

