Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| copper resistance protein nlpe | CPT03_RS20845 | Not Available | Negative | 4958873 - 4959322 | 16729.1 |
| peptide-methionine (s)-s-oxide reductase msra | CPT03_RS20850 | Not Available | Negative | 4959419 - 4960018 | 22310.7 |
| isopenicillin n synthase family dioxygenase | CPT03_RS20855 | Not Available | Positive | 4960263 - 4961225 | 36296.9 |
| duf1579 domain-containing protein | CPT03_RS20860 | Not Available | Negative | 4961286 - 4961852 | 21218.3 |
| serine hydrolase domain-containing protein | CPT03_RS20865 | Not Available | Negative | 4961952 - 4963769 | 67200.2 |
| dna mismatch repair endonuclease mutl | CPT03_RS20870 | Not Available | Positive | 4963962 - 4965842 | 69880.6 |
| rhomboid family intramembrane serine protease | CPT03_RS20875 | Not Available | Positive | 4965849 - 4966592 | 27882.6 |
| rhomboid family intramembrane serine protease | CPT03_RS20880 | Not Available | Positive | 4966585 - 4967445 | 31942.4 |
| endonuclease/exonuclease/phosphatase family protein | CPT03_RS20885 | Not Available | Positive | 4967479 - 4968591 | 42611.0 |
| cysteine--trna ligase | CPT03_RS20890 | Not Available | Positive | 4968610 - 4970070 | 55260.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

