Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methylenetetrahydrofolate reductase | CPT03_RS20745 | Not Available | Negative | 4935595 - 4936563 | 36406.9 |
| 5-methyltetrahydropteroyltriglutamate-- homocysteine s-methyltransferase | CPT03_RS20750 | Not Available | Negative | 4936624 - 4938930 | 87054.3 |
| lrp/asnc family transcriptional regulator | CPT03_RS20755 | Not Available | Positive | 4939292 - 4939753 | 17660.3 |
| glpgli family protein | CPT03_RS20760 | Not Available | Negative | 4939777 - 4940538 | 28957.2 |
| tonb-dependent receptor | CPT03_RS20765 | Not Available | Negative | 4940535 - 4943261 | 101143.0 |
| Trna-val | Not Available | Not Available | Positive | 4943461 - 4943538 | Not Available |
| Trna-val | Not Available | Not Available | Positive | 4943620 - 4943697 | Not Available |
| dna repair protein reco | CPT03_RS20780 | Not Available | Negative | 4943813 - 4944538 | 28104.3 |
| diacylglycerol kinase family protein | CPT03_RS20785 | Not Available | Negative | 4944542 - 4944889 | 12440.8 |
| 23s rrna (adenine(1618)-n(6))-methyltransferase rlmf | CPT03_RS20790 | Not Available | Positive | 4944993 - 4945937 | 35340.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

