Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadh:flavin oxidoreductase | CPT03_RS02010 | Not Available | Positive | 504193 - 505293 | 40386.9 |
| srpbcc family protein | CPT03_RS02015 | Not Available | Negative | 505559 - 505957 | 14864.0 |
| orotate phosphoribosyltransferase | CPT03_RS02020 | Not Available | Negative | 505965 - 506624 | 24311.0 |
| nudix hydrolase | CPT03_RS02025 | Not Available | Positive | 506680 - 507282 | 23010.4 |
| pantetheine-phosphate adenylyltransferase | CPT03_RS02030 | Not Available | Negative | 507266 - 507727 | 17236.1 |
| rsmd family rna methyltransferase | CPT03_RS02035 | Not Available | Negative | 507739 - 508281 | 20417.6 |
| duf3822 family protein | CPT03_RS02040 | Not Available | Negative | 508272 - 509102 | 31214.4 |
| atp-dependent dna helicase | CPT03_RS02045 | Not Available | Positive | 509155 - 510591 | 54154.8 |
| mcp four helix bundle domain-containing protein | CPT03_RS02050 | Not Available | Positive | 510614 - 511303 | 26002.0 |
| gtra family protein | CPT03_RS02055 | Not Available | Positive | 511365 - 511775 | 15632.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

