Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c oxidase subunit ii | CPT03_RS20200 | Not Available | Positive | 4816374 - 4817606 | 46024.3 |
| cbb3-type cytochrome c oxidase subunit i | CPT03_RS20205 | Not Available | Positive | 4817627 - 4819516 | 70791.1 |
| cox15/ctaa family protein | CPT03_RS20210 | Not Available | Positive | 4819709 - 4820665 | 36131.9 |
| heme o synthase | CPT03_RS20215 | Not Available | Positive | 4820677 - 4821555 | 32567.9 |
| heme-copper oxidase subunit iii | CPT03_RS20220 | Not Available | Positive | 4821562 - 4822152 | 22064.3 |
| cytochrome c oxidase subunit 3 | CPT03_RS20225 | Not Available | Positive | 4822183 - 4822890 | 26779.9 |
| cytochrome c oxidase subunit iv family protein | CPT03_RS20230 | Not Available | Positive | 4822911 - 4823270 | 13559.1 |
| sco family protein | CPT03_RS20235 | Not Available | Positive | 4823270 - 4823977 | 26297.7 |
| duf420 domain-containing protein | CPT03_RS20240 | Not Available | Positive | 4823999 - 4824571 | 21914.8 |
| hypothetical protein | CPT03_RS20245 | Not Available | Positive | 4824626 - 4824880 | 9332.64 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

