Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna primase | CPT03_RS20100 | Not Available | Positive | 4792871 - 4794844 | 74227.5 |
| yran family protein | CPT03_RS20105 | Not Available | Positive | 4794844 - 4795206 | 13960.3 |
| glutaminyl-peptide cyclotransferase | CPT03_RS20110 | Not Available | Positive | 4795187 - 4796293 | 41337.5 |
| duf4251 domain-containing protein | CPT03_RS20115 | Not Available | Negative | 4796307 - 4796849 | 19771.8 |
| glucose-6-phosphate isomerase | CPT03_RS20120 | Not Available | Negative | 4797009 - 4798658 | 61486.9 |
| hypothetical protein | CPT03_RS20125 | Not Available | Positive | 4798828 - 4799331 | 17180.1 |
| peptide chain release factor 2 | CPT03_RS20130 | Not Available | Positive | 4799410 - 4800484 | 41343.8 |
| alpha/beta hydrolase | CPT03_RS20135 | Not Available | Positive | 4800488 - 4801402 | 33177.0 |
| transglutaminase-like domain-containing protein | CPT03_RS20140 | Not Available | Negative | 4801404 - 4802273 | 33692.2 |
| o-methyltransferase | CPT03_RS20145 | Not Available | Positive | 4802291 - 4803091 | 30741.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

