Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miab | CPT03_RS20005 | Not Available | Negative | 4768265 - 4769713 | 54652.0 |
| hypothetical protein | CPT03_RS20010 | Not Available | Positive | 4770021 - 4771829 | 67613.6 |
| hypothetical protein | CPT03_RS20015 | Not Available | Positive | 4771875 - 4773677 | 68883.1 |
| phytase | CPT03_RS23185 | Not Available | Negative | 4773682 - 4773966 | 10791.6 |
| family 16 glycosylhydrolase | CPT03_RS20025 | Not Available | Negative | 4774154 - 4774963 | 30415.3 |
| dpp iv n-terminal domain-containing protein | CPT03_RS20030 | Not Available | Negative | 4774992 - 4777109 | 80795.9 |
| branched-chain amino acid aminotransferase | CPT03_RS20035 | Not Available | Negative | 4777228 - 4778292 | 39130.5 |
| tryptophan 2,3-dioxygenase family protein | CPT03_RS20040 | Not Available | Negative | 4778372 - 4779337 | 37927.5 |
| had-ib family phosphatase | CPT03_RS20045 | Not Available | Negative | 4779339 - 4780637 | 49445.9 |
| hypothetical protein | CPT03_RS23310 | Not Available | Negative | 4780639 - 4780965 | 12099.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

