Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polysaccharide deacetylase family protein | CPT03_RS01960 | Not Available | Negative | 489765 - 490649 | 33640.5 |
| s9 family peptidase | CPT03_RS01965 | Not Available | Positive | 490782 - 493286 | 95483.8 |
| c1 family peptidase | CPT03_RS01970 | Not Available | Negative | 493340 - 494446 | 40995.8 |
| outer membrane beta-barrel protein | CPT03_RS01975 | Not Available | Negative | 494566 - 495174 | 21409.3 |
| glycoside hydrolase family 130 protein | CPT03_RS01980 | Not Available | Positive | 495562 - 497028 | 56072.5 |
| glycosyltransferase family 4 protein | CPT03_RS01985 | Not Available | Negative | 497045 - 499327 | 86639.7 |
| atp-dependent chaperone clpb | CPT03_RS01990 | Not Available | Negative | 499475 - 502069 | 97252.4 |
| duf1801 domain-containing protein | CPT03_RS01995 | Not Available | Positive | 502253 - 502597 | 13784.1 |
| mfs transporter | CPT03_RS02000 | Not Available | Positive | 502598 - 503812 | 44437.6 |
| arsr/smtb family transcription factor | CPT03_RS02005 | Not Available | Positive | 503869 - 504171 | 11455.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

