Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna repair protein recn | CPT03_RS00165 | Not Available | Negative | 37201 - 38859 | 61441.5 |
| m56 family metallopeptidase | CPT03_RS00170 | Not Available | Negative | 38998 - 40818 | 69638.0 |
| blai/meci/copy family transcriptional regulator | CPT03_RS00175 | Not Available | Negative | 40846 - 41226 | 14275.1 |
| duf4835 family protein | CPT03_RS00180 | Not Available | Negative | 41305 - 42246 | 35858.4 |
| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase coabc | CPT03_RS00185 | Not Available | Negative | 42249 - 43442 | 43133.7 |
| dna-directed rna polymerase subunit omega | CPT03_RS00190 | Not Available | Negative | 43466 - 43789 | 12370.5 |
| outer membrane protein assembly factor bamd | CPT03_RS00195 | Not Available | Negative | 43789 - 44724 | 36041.8 |
| duf5655 domain-containing protein | CPT03_RS00200 | Not Available | Negative | 44812 - 45183 | 14522.4 |
| 16s ribosomal rna | Not Available | Not Available | Positive | 46031 - 47552 | Not Available |
| Trna-ile | Not Available | Not Available | Positive | 47666 - 47740 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

