Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| do family serine endopeptidase | CPT03_RS19805 | Not Available | Positive | 4728183 - 4729706 | 52931.0 |
| succinate dehydrogenase cytochrome b subunit | CPT03_RS19810 | Not Available | Positive | 4729877 - 4730557 | 25285.7 |
| fumarate reductase/succinate dehydrogenase flavoprotein subunit | CPT03_RS19815 | Not Available | Positive | 4730582 - 4732561 | 73351.2 |
| succinate dehydrogenase/fumarate reductase iron-sulfur subunit | CPT03_RS19820 | Not Available | Positive | 4732585 - 4733355 | 27883.4 |
| m56 family metallopeptidase | CPT03_RS19825 | Not Available | Negative | 4733445 - 4735436 | 74828.3 |
| blai/meci/copy family transcriptional regulator | CPT03_RS19830 | Not Available | Negative | 4735433 - 4735810 | 14818.0 |
| m20/m25/m40 family metallo-hydrolase | CPT03_RS19835 | Not Available | Positive | 4735980 - 4737338 | 50492.6 |
| hypothetical protein | CPT03_RS22855 | Not Available | Negative | 4737446 - 4737622 | 6355.91 |
| sensor histidine kinase | CPT03_RS19845 | Not Available | Positive | 4737853 - 4738884 | 39557.6 |
| lytr/algr family response regulator transcription factor | CPT03_RS19850 | Not Available | Positive | 4738881 - 4739627 | 28396.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

